atacseq-pipeline

End-to-end ATAC-seq workflow from FASTQ files to differential accessibility and TF footprinting. Covers alignment, peak calling with MACS3, QC metrics, and optional TOBIAS footprinting.

by GPTomics· Repository·other
Run in AgentAreaBrowse All Skills
Also installable via skills CLI
npx skills add GPTomics/bioSkills/workflows/atacseq-pipeline

Source

Repo:github.com/GPTomics/bioSkills
Path:workflows/atacseq-pipeline(main)

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