Browse 138,453 skills across 70 categories. Mirrored from majiayu000/claude-skill-registry.
Structured hypothesis formulation from observations. Use when you have experimental observations or data and need to for...
DNAnexus cloud genomics platform. Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows, FAS...
Electronic lab notebook API integration. Access notebooks, manage entries/attachments, backup notebooks, integrate with...
Latch platform for bioinformatics workflows. Build pipelines with Latch SDK, @workflow/@task decorators, deploy serverle...
Lab automation platform for Flex/OT-2 robots. Write Protocol API v2 protocols, liquid handling, hardware modules (heater...
Integration with protocols.io API for managing scientific protocols. This skill should be used when working with protoco...
Comprehensive toolkit for preparing ISO 13485 certification documentation for medical device Quality Management Systems....
This skill should be used when working with LaminDB, an open-source data framework for biology that makes data queryable...
High-impact scientific manuscript development for top-tier journals such as Nature, Science, and Cell. Use when the user...
Generate comprehensive market research reports (50+ pages) in the style of top consulting firms (McKinsey, BCG, Gartner)...
Convert files and office documents to Markdown. Supports PDF, DOCX, PPTX, XLSX, images (with OCR), audio (with transcrip...
Spectral similarity and compound identification for metabolomics. Use for comparing mass spectra, computing similarity s...
MATLAB and GNU Octave numerical computing for matrix operations, data analysis, visualization, and scientific computing....
Low-level plotting library for full customization. Use when you need fine-grained control over every plot element, creat...
Medicinal chemistry filters. Apply drug-likeness rules (Lipinski, Veber), PAINS filters, structural alerts, complexity m...
Access NIH Metabolomics Workbench via REST API (4,200+ studies). Query metabolites, RefMet nomenclature, MS/NMR data, m/...
Research methodology for hypothesis testing, evidence evaluation, and verification standards in geoscience research. Use...
The scientific method as an epistemological framework for producing reliable knowledge. Covers observation, question for...
Run Python code in the cloud with serverless containers, GPUs, and autoscaling. Use when deploying ML models, running ba...
Molecular featurization for ML (100+ featurizers). ECFP, MACCS, descriptors, pretrained models (ChemBERTa), convert SMIL...
Comprehensive toolkit for creating, analyzing, and visualizing complex networks and graphs in Python. Use when working w...
Comprehensive biosignal processing toolkit for analyzing physiological data including ECG, EEG, EDA, RSP, PPG, EMG, and...
Neuropixels neural recording analysis. Load SpikeGLX/OpenEphys data, preprocess, motion correction, Kilosort4 spike sort...
Official Opentrons Protocol API for OT-2 and Flex robots. Use when writing protocols specifically for Opentrons hardware...
This skill should be used when converting academic papers into promotional and presentation formats including interactiv...
Access RCSB PDB for 3D protein/nucleic acid structures. Search by text/sequence/structure, download coordinates (PDB/mmC...
Structured manuscript/grant review with checklist-based evaluation. Use when writing formal peer reviews with specific c...
Hardware-agnostic quantum ML framework with automatic differentiation. Use when training quantum circuits via gradients,...
This skill should be used for time series machine learning tasks including classification, regression, clustering, forec...
This skill should be used when working with annotated data matrices in Python, particularly for single-cell genomics ana...
Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when...
Comprehensive Python library for astronomy and astrophysics. This skill should be used when working with astronomical da...
Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular...
Primary Python tool for 40+ bioinformatics services. Preferred for multi-database workflows: UniProt, KEGG, ChEMBL, PubC...
Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biology a...
Pythonic wrapper around RDKit with simplified interface and sensible defaults. Preferred for standard drug discovery: SM...
NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for...
Multiagent AI system for scientific research assistance that automates research workflows from data analysis to publicat...
Comprehensive toolkit for protein language models including ESM3 (generative multimodal protein design across sequence,...
Parse FCS (Flow Cytometry Standard) files v2.0-3.1. Extract events as NumPy arrays, read metadata/channels, convert to C...
This skill should be used when working with genomic interval data (BED files) for machine learning tasks. Use for traini...
CLI/Python toolkit for rapid bioinformatics queries. Preferred for quick BLAST searches. Access to 20+ databases: gene i...
High-performance toolkit for genomic interval analysis in Rust with Python bindings. Use when working with genomic regio...
Convert various file formats (PDF, Office documents, images, audio, web content, structured data) to Markdown optimized...
This skill should be used when working with reinforcement learning tasks including high-performance RL training, custom...
Python library for working with DICOM (Digital Imaging and Communications in Medicine) files. Use this skill when readin...
Materials science toolkit. Crystal structures (CIF, POSCAR), phase diagrams, band structure, DOS, Materials Project inte...
Python interface to OpenMS for mass spectrometry data analysis. Use for LC-MS/MS proteomics and metabolomics workflows i...
Therapeutics Data Commons. AI-ready drug discovery datasets (ADME, toxicity, DTI), benchmarks, scaffold splits, molecula...
Cheminformatics toolkit for fine-grained molecular control. SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprin...
Machine learning in Python with scikit-learn. Use when working with supervised learning (classification, regression), un...
Comprehensive toolkit for survival analysis and time-to-event modeling in Python using scikit-survival. Use this skill w...
This skill should be used when working with single-cell omics data analysis using scvi-tools, including scRNA-seq, scATA...
Statistical visualization. Scatter, box, violin, heatmaps, pair plots, regression, correlation matrices, KDE, faceted pl...
Use this skill for reinforcement learning tasks including training RL agents (PPO, SAC, DQN, TD3, DDPG, A2C, etc.), crea...
Use this skill when working with symbolic mathematics in Python. This skill should be used for symbolic computation task...
Use this skill when working with scientific research tools and workflows across bioinformatics, cheminformatics, genomic...
Graph Neural Networks (PyG). Node/graph classification, link prediction, GCN, GAT, GraphSAGE, heterogeneous graphs, mole...
Graph-based drug discovery toolkit. Molecular property prediction (ADMET), protein modeling, knowledge graph reasoning,...
UMAP dimensionality reduction. Fast nonlinear manifold learning for 2D/3D visualization, clustering preprocessing (HDBSC...
Use this skill for processing and analyzing large tabular datasets (billions of rows) that exceed available RAM. Vaex ex...
Interactive visualization library. Use when you need hover info, zoom, pan, or web-embeddable charts. Best for dashboard...
Automatically summarize scientific podcasts like Huberman Lab and Nature Podcast
Fast in-memory DataFrame library for datasets that fit in RAM. Use when pandas is too slow but data still fits in memory...
Create research posters using HTML/CSS that can be exported to PDF or PPTX. Use this skill ONLY when the user explicitly...
This skill should be used when researchers need help with research problem selection, project ideation, troubleshooting...
High-performance reinforcement learning framework optimized for speed and scale. Use when you need fast parallel trainin...
Differential gene expression analysis (Python DESeq2). Identify DE genes from bulk RNA-seq counts, Wald tests, FDR corre...
Comprehensive healthcare AI toolkit for developing, testing, and deploying machine learning models with clinical data. T...
Vendor-agnostic lab automation framework. Use when controlling multiple equipment types (Hamilton, Tecan, Opentrons, pla...
Bayesian modeling with PyMC. Build hierarchical models, MCMC (NUTS), variational inference, LOO/WAIC comparison, posteri...
Multi-objective optimization framework. NSGA-II, NSGA-III, MOEA/D, Pareto fronts, constraint handling, benchmarks (ZDT,...
Complete mass spectrometry analysis platform. Use for proteomics workflows feature detection, peptide identification, pr...
IBM quantum computing framework. Use when targeting IBM Quantum hardware, working with Qiskit Runtime for production wor...
Quantum physics simulation library for open quantum systems. Use when studying master equations, Lindblad dynamics, deco...
Write research/technical reports with strong structure + figure standards. Supports Markdown/HTML/PDF outputs (Quarto op...
Comprehensive scientific document review and analysis. Use when Claude needs to review scientific papers, reports, prepr...