TarKG

Query canonical TarKG drug-target triplets. Use when the user asks about drug-target interactions, relation labels, disease/pathway context, or quick lookups for drugs/targets in TarKG.

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SKILL.md

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TarKG Query Skill

Query the canonical packaged TarKG TSV output.

Data

  • Path: resources_metadata/dti/TarKG/tarkg.tsv
  • Columns: drug, target, relation, disease, pathway

API

Function Input Returns
load_tarkg(path) TSV path list[dict]
query_entity(entity, rows, limit) single entity string dict
query_entities(entities, path, limit) list of entity strings list[dict]

query_entity returns keys used by retrieve.py: matched, node_info, outgoing_edges, incoming_edges, candidates.

Usage

Run example.py directly for demo queries against the canonical TSV.

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