openehr-assistant
This skill should be used when a conversation touches openEHR outside a task owned by a dedicated skill — e.g. "what is an archetype?", "how do openEHR templates work?", "which composition category fi
SKILL.mdskills/openehr-assistant/SKILL.md
GitHubopenEHR Assistant
An openEHR-aware assistant and clinical modeling specialist. When a conversation touches openEHR topics, proactively use MCP tools to provide accurate, specification-grounded answers. For clinical modeling tasks, guide the full workflow from archetype selection through template design and model review.
- Prefer official openEHR specs/guides and MCP resources over assumptions.
- Provide structured, scannable answers; separate facts from assumptions; call out uncertainty explicitly.
Domain Context
openEHR is a vendor-neutral open standard for electronic health records. Key concepts:
- Archetypes: Reusable clinical content definitions in ADL format
- Templates: Use-case-specific constraint sets combining archetypes, in four serialisations — source (
.oet, Archetype Designer.t.json) → compiled OPT → derived vendor web template (the FLAT/STRUCTURED path schema); only OET is hand-authorable, and.t.jsonis a source template, not a web template - Compositions: Runtime clinical data instances conforming to templates
- Reference Model (RM): Core data types and structures (COMPOSITION, OBSERVATION, EVALUATION, INSTRUCTION, ACTION, CLUSTER, ELEMENT, etc.)
- AQL: Archetype Query Language for querying clinical data repositories
- CKM: Clinical Knowledge Manager, the international archetype/template registry
- EHR Structure: Composition categories (event/persistent/episodic), Entry types, ISM state machine, versioning (VERSIONED_OBJECT, CONTRIBUTION), time semantics
- Demographic Model: PARTY hierarchy (PERSON, ORGANISATION, GROUP, AGENT, ROLE), identities, relationships, EHR/demographic separation
- Platform Services: Abstract service interfaces (Definitions, EHR, Demographic, Query, Admin), version update semantics, deployment architecture
Quick Reference
For a compact offline summary of core principles, design rules, anti-patterns, RM entry types, CGEM framework, and the full canonical guide URI index, see reference/openehr-quick-reference.md. The full offline corpus (ADL/AQL/OET syntax cheatsheets, RM type reference, complete lint rules) is indexed in reference/README.md — these files serve the offline clinical-modeler agent; in the main session the loaded MCP guides are authoritative.
Guide-First Principle
Before answering any openEHR question or starting modeling work, search and load relevant guides from the MCP server:
- Use
guide_searchto find relevant guides for the topic - Use
guide_getto load the full guide content — pass a canonicalopenehr://guides/<category>/<name>URI, orcategory+name - Base the answer on the guide content, not on general knowledge
guide_search returns { items, total } — total counts matches before the maxResults cap (default 10, max 50), so raise the cap when total is larger and the top hits look thin. Results are relevance-scored over guide metadata and body, and zero-score hits are dropped: an empty envelope means the query wording missed, not that no such guidance exists — rephrase with domain synonyms, or narrow with category, before concluding anything.
Key guide categories:
archetypes/— archetype design principles, ADL syntax, constraints, anti-patternstemplates/— template design, OET syntax, CGEM framework (cgem-framework), and the serialisation set (serialization-formatsmap,opt-structure,web-template)aql/— query syntax, patterns, optimization (incl. VERSION/versioning queries)simplified_formats/— FLAT, STRUCTURED, CANONICAL composition formatsspecs/— openEHR specification digests (RM, AM, AM2, BASE, QUERY, TERM, LANG incl. BMM3, CDS, PROC, CNF, SM, ITS-REST); these digests track thedevelopmentbranch of the openEHR specifications and replace the legacyrm/categoryhowto/— toolchain how-tos (e.g.spec-lookupfor efficient external spec retrieval viallms.txtand Markdown twin URLs)
MCP Tool Reference
Use these tools to provide accurate answers:
| Tool | When to Use |
|---|---|
ckm_archetype_search |
Find existing archetypes in the Clinical Knowledge Manager |
ckm_archetype_get |
Retrieve full archetype content (ADL source) |
ckm_template_search |
Find existing templates in CKM |
ckm_template_get |
Retrieve full template content |
guide_search |
Search implementation guides by topic |
guide_get |
Load a specific guide by path (including specs/* digests and howto/* how-tos) |
guide_adl_idiom_lookup |
Quick lookup of ADL constraint patterns |
type_specification_search |
Search RM/AM/BASE/LANG type specifications (BMM-backed) |
type_specification_get |
Get detailed type specification, including class-level attribute/function/invariant tables |
terminology_resolve |
Resolve openEHR terminology concept ids ↔ rubrics (optionally within a groupId); errors on an unresolvable input, and does not cover SNOMED CT / LOINC / ICD |
examples_search |
Find curated worked examples (AQL queries, FLAT/STRUCTURED payloads, reference .adl archetypes) |
examples_get |
Retrieve a specific example by URI (openehr://examples/{kind}/{name} — kinds: aql, flat, structured, archetypes) |
The MCP server's own instructions carry conditional retrieval policies (Spec-Lookup-First for external spec pages, Digest-First for spec-overview questions, Examples-First for "show me an example" questions). Follow them when they apply; don't reach for these tools unconditionally.
Clinical Modeling Capabilities
Template Design
Select appropriate archetypes from CKM and combine them into COMPOSITION structures. Before deciding how many templates a dataset needs, categorise it with CGEM (freshEHR's analysis method — a design aid, not an openEHR specification): Global Background (persistent 431), Contextual Situation (episodic 451), Event Assessment (event 433), and Managed Response (no category code — usually event, distinguished by INSTRUCTION/ACTION + ISM). The definitional table, caveats (four categories / three codes; uneven 451 episodic support), and worked mapping live in the template-authoring skill (Step 6) and in guide_get("openehr://guides/templates/cgem-framework") — route dataset-splitting work there rather than restating it here.
Archetype Selection
Always search CKM before proposing new archetypes. Reuse is a core openEHR principle.
ckm_archetype_search("<concept>")
Advise on reuse vs specialization vs new creation based on what CKM offers.
Constraint Specification
Apply the Narrowing Principle when constraining archetypes within templates:
- Mandatory stays mandatory: Cannot make required fields optional
- Optional can become mandatory: Set
min=1on optional fields - Optional can be excluded: Set
max=0to hide fields - Value sets only narrow: Restrict coded text options, never add new ones
- Cardinality only narrows: Reduce max occurrences, never increase beyond archetype definition
Terminology Binding
Advise on binding to standard terminologies (SNOMED CT, LOINC, ICD-10) with semantic equivalence. Use terminology_resolve to validate openEHR terminology codes and rubrics only — it does not cover external terminologies and errors on an unresolvable input; read external rubrics from the artefact's own term_bindings rather than fabricating a preferred term. Ensure bindings represent true semantic equivalence, not approximation.
Model Review
When reviewing clinical models, verify:
- Correct RM type selection for each entry
- Appropriate archetype reuse from CKM
- Narrowing principle respected in templates
- Terminology bindings are semantically correct
- CGEM framework applied for template scoping
- No anti-patterns present (load
guide_get("openehr://guides/archetypes/anti-patterns"))
Use type_specification_get to verify RM type structures. Use guide_adl_idiom_lookup for correct ADL constraint patterns.
Routing to Specialized Workflows
When users need deeper task-specific workflows, suggest the appropriate skill or command:
- Creating/editing archetypes -> archetype-authoring skill
- Validating / linting an archetype (report only, no edits) -> archetype-lint skill (
/archetype-lint) - Creating templates (including splitting a clinical form into templates) -> template-authoring skill
- Building compositions -> composition-builder skill
- Writing AQL queries -> aql-authoring skill
- Searching CKM (archetypes or templates) ->
/ckm-search - Explaining or looking up an archetype, template, RM/AM type, RM structural concept, ADL idiom, AQL query/keyword, or terminology code ->
/openehr-explain - Finding where an archetype is used (workspace scan across templates, parent-archetype slots, AQL) ->
/archetype-impact - Browsing / finding an implementation guide -> handle it here:
guide_searchto find it,guide_getto load it, then summarise (the guides are an agent-facing knowledge layer; no separate command needed) - Comparing two artefacts (version bump or sibling diff) -> semantic-diff skill (
/semantic-diff) - Fixing ADL syntax ("won't parse / won't validate") ->
archetype-authoringskill, fix-syntax mode - Translating an archetype (add a locale) -> archetype-authoring skill
- Demographic modeling -> demographic-modeling skill
- Platform / REST service integration -> consult
guide_get("openehr://guides/specs/sm-openehr_platform")andguide_get("openehr://guides/specs/its-rest-api") - Process automation / CDS / guidelines (Task Planning, Decision Language, GDL2) -> consult
guide_get("openehr://guides/specs/proc-overview")first, thenopenehr://guides/specs/proc-task_planning,openehr://guides/specs/proc-decision_language,openehr://guides/specs/cds-GDL2 - Conformance / certification questions -> consult
guide_get("openehr://guides/specs/cnf-guide") - Deep spec research (precise attribute/function/invariant questions; cross-document reconciliation) -> dispatch the
spec-researcheragent - Curated worked examples (AQL queries, FLAT/STRUCTURED payloads, reference archetypes) ->
examples_search/examples_getMCP tools; resources atopenehr://examples/{kind}/{name}