alignment-filtering

Filter alignments by flags, mapping quality, and regions using samtools view and pysam. Use when extracting specific reads, removing low-quality alignments, or subsetting to target regions.

by GPTomics· Repository·other

Run in AgentArea Browse All Skills

Also installable via skills CLI

npx skills add GPTomics/bioSkills/alignment-files/alignment-filtering

Source

Repo:github.com/GPTomics/bioSkills

Path:alignment-files/alignment-filtering/SKILL.md(main)

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