atacseq-pipeline

End-to-end ATAC-seq workflow from FASTQ files to differential accessibility and TF footprinting. Covers alignment, peak calling with MACS3, QC metrics, and optional TOBIAS footprinting.

by GPTomics· Repository·data

Run in AgentArea Browse All Skills

Also installable via skills CLI

npx skills add GPTomics/bioSkills/data/atacseq-pipeline

Source

Repo:github.com/GPTomics/bioSkills

Path:data/atacseq-pipeline(main)

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