36,869 skills sorted by stars.
Query NCBI ClinVar for variant clinical significance. Search by gene/position, interpret pathogenicity classifications,...
Access COSMIC cancer mutation database. Query somatic mutations, Cancer Gene Census, mutational signatures, gene fusions...
Access and analyze comprehensive drug information from the DrugBank database including drug properties, interactions, ta...
Access European Nucleotide Archive via API/FTP. Retrieve DNA/RNA sequences, raw reads (FASTQ), genome assemblies by acce...
Query openFDA API for drugs, devices, adverse events, recalls, regulatory submissions (510k, PMA), substance identificat...
Query NCBI Gene via E-utilities/Datasets API. Search by symbol/ID, retrieve gene info (RefSeqs, GO, locations, phenotype...
Query NHGRI-EBI GWAS Catalog for SNP-trait associations. Search variants by rs ID, disease/trait, gene, retrieve p-value...
Access Human Metabolome Database (220K+ metabolites). Search by name/ID/structure, retrieve chemical properties, biomark...
Direct REST API access to KEGG (academic use only). Pathway analysis, gene-pathway mapping, metabolic pathways, drug int...
Query Open Targets Platform for target-disease associations, drug target discovery, tractability/safety data, genetics/o...
Query PubChem via PUG-REST API/PubChemPy (110M+ compounds). Search by name/CID/SMILES, retrieve properties, similarity/s...
Direct REST API access to PubMed. Advanced Boolean/MeSH queries, E-utilities API, batch processing, citation management....
NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for...
Multiagent AI system for scientific research assistance that automates research workflows from data analysis to publicat...
Phylogenetic tree toolkit (ETE). Tree manipulation (Newick/NHX), evolutionary event detection, orthology/paralogy, NCBI...
Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be...
Parse FCS (Flow Cytometry Standard) files v2.0-3.1. Extract events as NumPy arrays, read metadata/channels, convert to C...
Generate or edit images using AI models (FLUX, Gemini). Use for general-purpose image generation including photos, illus...
Access NCBI GEO for gene expression/genomics data. Search/download microarray and RNA-seq datasets (GSE, GSM, GPL), retr...
Python library for working with geospatial vector data including shapefiles, GeoJSON, and GeoPackage files. Use when wor...
Fast CLI/Python queries to 20+ bioinformatics databases. Use for quick lookups: gene info, BLAST searches, AlphaFold str...
Lightweight WSI tile extraction and preprocessing. Use for basic slide processing tissue detection, tile extraction, sta...
Structured hypothesis formulation from observations. Use when you have experimental observations or data and need to for...
DNAnexus cloud genomics platform. Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows, FAS...
Electronic lab notebook API integration. Access notebooks, manage entries/attachments, backup notebooks, integrate with...
Latch platform for bioinformatics workflows. Build pipelines with Latch SDK, @workflow/@task decorators, deploy serverle...
Lab automation platform for Flex/OT-2 robots. Write Protocol API v2 protocols, liquid handling, hardware modules (heater...
Integration with protocols.io API for managing scientific protocols. This skill should be used when working with protoco...
Comprehensive toolkit for preparing ISO 13485 certification documentation for medical device Quality Management Systems....
This skill should be used when working with LaminDB, an open-source data framework for biology that makes data queryable...
Generate comprehensive market research reports (50+ pages) in the style of top consulting firms (McKinsey, BCG, Gartner)...
Low-level plotting library for full customization. Use when you need fine-grained control over every plot element, creat...
Medicinal chemistry filters. Apply drug-likeness rules (Lipinski, Veber), PAINS filters, structural alerts, complexity m...
Access NIH Metabolomics Workbench via REST API (4,200+ studies). Query metabolites, RefMet nomenclature, MS/NMR data, m/...
Run Python code in the cloud with serverless containers, GPUs, and autoscaling. Use when deploying ML models, running ba...
Comprehensive toolkit for creating, analyzing, and visualizing complex networks and graphs in Python. Use when working w...
Official Opentrons Protocol API for OT-2 and Flex robots. Use when writing protocols specifically for Opentrons hardware...
This skill should be used when converting academic papers into promotional and presentation formats including interactiv...
Access RCSB PDB for 3D protein/nucleic acid structures. Search by text/sequence/structure, download coordinates (PDB/mmC...
Structured manuscript/grant review with checklist-based evaluation. Use when writing formal peer reviews with specific c...