83,201 skills sorted by stars.
Multiagent AI system for scientific research assistance that automates research workflows from data analysis to publicat...
Comprehensive toolkit for protein language models including ESM3 (generative multimodal protein design across sequence,...
Parse FCS (Flow Cytometry Standard) files v2.0-3.1. Extract events as NumPy arrays, read metadata/channels, convert to C...
This skill should be used when working with genomic interval data (BED files) for machine learning tasks. Use for traini...
CLI/Python toolkit for rapid bioinformatics queries. Preferred for quick BLAST searches. Access to 20+ databases: gene i...
High-performance toolkit for genomic interval analysis in Rust with Python bindings. Use when working with genomic regio...
This skill should be used when working with LaminDB, an open-source data framework for biology that makes data queryable...
Convert various file formats (PDF, Office documents, images, audio, web content, structured data) to Markdown optimized...
Medicinal chemistry filters. Apply drug-likeness rules (Lipinski, Veber), PAINS filters, structural alerts, complexity m...
Molecular featurization for ML (100+ featurizers). ECFP, MACCS, descriptors, pretrained models (ChemBERTa), convert SMIL...
Comprehensive biosignal processing toolkit for analyzing physiological data including ECG, EEG, EDA, RSP, PPG, EMG, and...
This skill should be used when converting academic papers into promotional and presentation formats including interactiv...
This skill should be used when working with reinforcement learning tasks including high-performance RL training, custom...
Python library for working with DICOM (Digital Imaging and Communications in Medicine) files. Use this skill when readin...
Materials science toolkit. Crystal structures (CIF, POSCAR), phase diagrams, band structure, DOS, Materials Project inte...
Python interface to OpenMS for mass spectrometry data analysis. Use for LC-MS/MS proteomics and metabolomics workflows i...
Therapeutics Data Commons. AI-ready drug discovery datasets (ADME, toxicity, DTI), benchmarks, scaffold splits, molecula...
Cheminformatics toolkit for fine-grained molecular control. SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprin...
Machine learning in Python with scikit-learn. Use when working with supervised learning (classification, regression), un...
Comprehensive toolkit for survival analysis and time-to-event modeling in Python using scikit-survival. Use this skill w...
This skill should be used when working with single-cell omics data analysis using scvi-tools, including scRNA-seq, scATA...
Statistical visualization. Scatter, box, violin, heatmaps, pair plots, regression, correlation matrices, KDE, faceted pl...
Use this skill for reinforcement learning tasks including training RL agents (PPO, SAC, DQN, TD3, DDPG, A2C, etc.), crea...
Use this skill when working with symbolic mathematics in Python. This skill should be used for symbolic computation task...
Use this skill when working with scientific research tools and workflows across bioinformatics, cheminformatics, genomic...
Graph Neural Networks (PyG). Node/graph classification, link prediction, GCN, GAT, GraphSAGE, heterogeneous graphs, mole...
Graph-based drug discovery toolkit. Molecular property prediction (ADMET), protein modeling, knowledge graph reasoning,...
UMAP dimensionality reduction. Fast nonlinear manifold learning for 2D/3D visualization, clustering preprocessing (HDBSC...
Use this skill for processing and analyzing large tabular datasets (billions of rows) that exceed available RAM. Vaex ex...
Interactive visualization library. Use when you need hover info, zoom, pan, or web-embeddable charts. Best for dashboard...
Automatically summarize scientific podcasts like Huberman Lab and Nature Podcast
Fast in-memory DataFrame library for datasets that fit in RAM. Use when pandas is too slow but data still fits in memory...
Create research posters using HTML/CSS that can be exported to PDF or PPTX. Use this skill ONLY when the user explicitly...
This skill should be used when researchers need help with research problem selection, project ideation, troubleshooting...
Integration with protocols.io API for managing scientific protocols. This skill should be used when working with protoco...
High-performance reinforcement learning framework optimized for speed and scale. Use when you need fast parallel trainin...
Differential gene expression analysis (Python DESeq2). Identify DE genes from bulk RNA-seq counts, Wald tests, FDR corre...
Comprehensive healthcare AI toolkit for developing, testing, and deploying machine learning models with clinical data. T...
Vendor-agnostic lab automation framework. Use when controlling multiple equipment types (Hamilton, Tecan, Opentrons, pla...
Bayesian modeling with PyMC. Build hierarchical models, MCMC (NUTS), variational inference, LOO/WAIC comparison, posteri...
Multi-objective optimization framework. NSGA-II, NSGA-III, MOEA/D, Pareto fronts, constraint handling, benchmarks (ZDT,...
Complete mass spectrometry analysis platform. Use for proteomics workflows feature detection, peptide identification, pr...