83,201 skills sorted by stars.
Lightweight WSI tile extraction and preprocessing. Use for basic slide processing tissue detection, tile extraction, sta...
Access Human Metabolome Database (220K+ metabolites). Search by name/ID/structure, retrieve chemical properties, biomark...
Automated LLM-driven hypothesis generation and testing on tabular datasets. Use when you want to systematically explore...
Structured hypothesis formulation from observations. Use when you have experimental observations or data and need to for...
DNAnexus cloud genomics platform. Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows, FAS...
Electronic lab notebook API integration. Access notebooks, manage entries/attachments, backup notebooks, integrate with...
Latch platform for bioinformatics workflows. Build pipelines with Latch SDK, @workflow/@task decorators, deploy serverle...
Lab automation platform for Flex/OT-2 robots. Write Protocol API v2 protocols, liquid handling, hardware modules (heater...
Integration with protocols.io API for managing scientific protocols. This skill should be used when working with protoco...
Comprehensive toolkit for preparing ISO 13485 certification documentation for medical device Quality Management Systems....
This skill should be used when working with LaminDB, an open-source data framework for biology that makes data queryable...
High-impact scientific manuscript development for top-tier journals such as Nature, Science, and Cell. Use when the user...
Generate comprehensive market research reports (50+ pages) in the style of top consulting firms (McKinsey, BCG, Gartner)...
Convert files and office documents to Markdown. Supports PDF, DOCX, PPTX, XLSX, images (with OCR), audio (with transcrip...
Spectral similarity and compound identification for metabolomics. Use for comparing mass spectra, computing similarity s...
MATLAB and GNU Octave numerical computing for matrix operations, data analysis, visualization, and scientific computing....
Low-level plotting library for full customization. Use when you need fine-grained control over every plot element, creat...
Medicinal chemistry filters. Apply drug-likeness rules (Lipinski, Veber), PAINS filters, structural alerts, complexity m...
Access NIH Metabolomics Workbench via REST API (4,200+ studies). Query metabolites, RefMet nomenclature, MS/NMR data, m/...
Research methodology for hypothesis testing, evidence evaluation, and verification standards in geoscience research. Use...
The scientific method as an epistemological framework for producing reliable knowledge. Covers observation, question for...
Run Python code in the cloud with serverless containers, GPUs, and autoscaling. Use when deploying ML models, running ba...
Molecular featurization for ML (100+ featurizers). ECFP, MACCS, descriptors, pretrained models (ChemBERTa), convert SMIL...
Comprehensive toolkit for creating, analyzing, and visualizing complex networks and graphs in Python. Use when working w...
Comprehensive biosignal processing toolkit for analyzing physiological data including ECG, EEG, EDA, RSP, PPG, EMG, and...
Neuropixels neural recording analysis. Load SpikeGLX/OpenEphys data, preprocess, motion correction, Kilosort4 spike sort...
Official Opentrons Protocol API for OT-2 and Flex robots. Use when writing protocols specifically for Opentrons hardware...
This skill should be used when converting academic papers into promotional and presentation formats including interactiv...
Access RCSB PDB for 3D protein/nucleic acid structures. Search by text/sequence/structure, download coordinates (PDB/mmC...
Structured manuscript/grant review with checklist-based evaluation. Use when writing formal peer reviews with specific c...
Hardware-agnostic quantum ML framework with automatic differentiation. Use when training quantum circuits via gradients,...
This skill should be used for time series machine learning tasks including classification, regression, clustering, forec...
This skill should be used when working with annotated data matrices in Python, particularly for single-cell genomics ana...
Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when...
Comprehensive Python library for astronomy and astrophysics. This skill should be used when working with astronomical da...
Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular...
Primary Python tool for 40+ bioinformatics services. Preferred for multi-database workflows: UniProt, KEGG, ChEMBL, PubC...
Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biology a...
Pythonic wrapper around RDKit with simplified interface and sensible defaults. Preferred for standard drug discovery: SM...
NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for...