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Agent skills directory

Browse 182,820 skills across 14 categories.

Categories

scientific-chembl-database

Query ChEMBL bioactive molecules and drug discovery data. Search compounds by structure/properties, retrieve bioactivity...

by Blurjp

scientific-cirq

Google quantum computing framework. Use when targeting Google Quantum AI hardware, designing noise-aware circuits, or ru...

by Blurjp

scientific-citation-management

Comprehensive citation management for academic research. Search Google Scholar and PubMed for papers, extract accurate m...

by pathvanasoftware

scientific-clinical-decision-support

Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, inclu...

by pathvanasoftware
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scientific-clinical-reports

Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/l...

by Blurjp

scientific-clinicaltrials-database

Query ClinicalTrials.gov via API v2. Search trials by condition, drug, location, status, or phase. Retrieve trial detail...

by pathvanasoftware

scientific-cobrapy

Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biology a...

by Blurjp

scientific-cover-visual

Use when creating scientific magazine cover style images or prompts, research hero visuals, journal-cover-inspired conce...

by 2023Anita

scientific-critical-thinking

Evaluate scientific claims and evidence quality. Use for assessing experimental design validity, identifying biases and...

by Clay-HHK

scientific-critical-thinking

Evaluate research rigor. Assess methodology, experimental design, statistical validity, biases, confounding, evidence qu...

by danieldekay

scientific-critical-thinking

评估研究严谨性。用于评估方法学、实验设计、统计学有效性、偏倚、混杂因素以及证据质量(如 GRADE、Cochrane 偏倚风险评估),以对科学结论进行批判性分析。

by Victory-Hugo

scientific-dask

Distributed computing for larger-than-RAM pandas/NumPy workflows. Use when you need to scale existing pandas/NumPy code...

by Blurjp

scientific-data-preprocessing

⚠️ CRITICAL USER EXPERIENCE-BASED SKILL - ALWAYS CONSULT BEFORE DATA PREPROCESSING ⚠️ Prevents catastrophic errors (88.9...

by foryourhealth111-pixel

scientific-datacommons-client

Work with Data Commons, a platform providing programmatic access to public statistical data from global sources. Use thi...

by pathvanasoftware

scientific-datamol

Pythonic wrapper around RDKit with simplified interface and sensible defaults. Preferred for standard drug discovery inc...

by Blurjp

scientific-db-biorxiv-database

Efficient database search tool for bioRxiv preprint server. Use this skill when searching for life sciences preprints by...

by jackspace

scientific-db-chembl-database

Query ChEMBL's bioactive molecules and drug discovery data. Search compounds by structure/properties, retrieve bioactivi...

by jackspace

scientific-db-clinicaltrials-database

Query ClinicalTrials.gov via API v2. Search trials by condition, drug, location, status, or phase. Retrieve trial detail...

by jackspace

scientific-db-clinpgx-database

Access ClinPGx pharmacogenomics data (successor to PharmGKB). Query gene-drug interactions, CPIC guidelines, allele func...

by jackspace

scientific-db-clinvar-database

Query NCBI ClinVar for variant clinical significance. Search by gene/position, interpret pathogenicity classifications,...

by jackspace

scientific-db-cosmic-database

Access COSMIC cancer mutation database. Query somatic mutations, Cancer Gene Census, mutational signatures, gene fusions...

by jackspace

scientific-db-drugbank-database

Access and analyze comprehensive drug information from the DrugBank database including drug properties, interactions, ta...

by jackspace

scientific-db-ena-database

Access European Nucleotide Archive via API/FTP. Retrieve DNA/RNA sequences, raw reads (FASTQ), genome assemblies by acce...

by jackspace

scientific-db-fda-database

Query openFDA API for drugs, devices, adverse events, recalls, regulatory submissions (510k, PMA), substance identificat...

by jackspace

scientific-db-gene-database

Query NCBI Gene via E-utilities/Datasets API. Search by symbol/ID, retrieve gene info (RefSeqs, GO, locations, phenotype...

by jackspace

scientific-db-gwas-database

Query NHGRI-EBI GWAS Catalog for SNP-trait associations. Search variants by rs ID, disease/trait, gene, retrieve p-value...

by jackspace

scientific-db-hmdb-database

Access Human Metabolome Database (220K+ metabolites). Search by name/ID/structure, retrieve chemical properties, biomark...

by jackspace

scientific-db-kegg-database

Direct REST API access to KEGG (academic use only). Pathway analysis, gene-pathway mapping, metabolic pathways, drug int...

by jackspace

scientific-db-opentargets-database

Query Open Targets Platform for target-disease associations, drug target discovery, tractability/safety data, genetics/o...

by jackspace

scientific-db-pubchem-database

Query PubChem via PUG-REST API/PubChemPy (110M+ compounds). Search by name/CID/SMILES, retrieve properties, similarity/s...

by jackspace

scientific-db-pubmed-database

Direct REST API access to PubMed. Advanced Boolean/MeSH queries, E-utilities API, batch processing, citation management....

by jackspace

scientific-debugging

科学调试专家 - 观察(Observe) -> 假设(Hypothesize) -> 实验(Experiment) -> 修复(Fix)

by VidyFoo

scientific-deepchem

Molecular ML with diverse featurizers and pre-built datasets. Use for property prediction (ADMET, toxicity) with traditi...

by Blurjp

scientific-deeptools

NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for...

by Blurjp

scientific-denario

Multiagent AI system for scientific research assistance that automates research workflows from data analysis to publicat...

by Blurjp

scientific-diffdock

Diffusion-based molecular docking. Predict protein-ligand binding poses from PDB/SMILES, confidence scores, virtual scre...

by Blurjp

scientific-drugbank-database

Access and analyze comprehensive drug information from the DrugBank database including drug properties, interactions, ta...

by pathvanasoftware

scientific-ena-database

Access European Nucleotide Archive via API/FTP. Retrieve DNA/RNA sequences, raw reads (FASTQ), genome assemblies by acce...

by Blurjp

scientific-esm

Comprehensive toolkit for protein language models including ESM3 (generative multimodal protein design across sequence,...

by pathvanasoftware

scientific-etetoolkit

Phylogenetic tree toolkit (ETE). Tree manipulation (Newick/NHX), evolutionary event detection, orthology/paralogy, NCBI...

by Blurjp

scientific-exploratory-data-analysis

Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be...

by pathvanasoftware

scientific-fda-database

Query openFDA API for drugs, devices, adverse events, recalls, regulatory submissions (510k, PMA), substance identificat...

by pathvanasoftware

scientific-figure

Use when the user has scientific data (or a prompt alluding to scientific data) and wants a publication-quality figure m...

by gaasher

scientific-figure-production

Use when producing a figure for a paper, preprint, slide, poster, email report or web page: final size and resolution, f...

by ieepirzy

scientific-figure-studio

FigureCraft 根据科学对象、关系和数据制作科研图与语义配色。适用于机制、硬件、分层材料、定量图及整套配图,交付可编辑图源和分别记录的技术、科学与视觉审阅,保留数值、拓扑和修改范围。

by zlsjtj

scientific-figures

Generate publication-quality scientific figures with consistent styling. Use when experiments need visualization, benchm...

by rhowardstone

scientific-figures

This skill should be used when generating publication-ready scientific figures — ROC curves, confusion matrix heatmaps,...

by ssinder

scientific-flowio

Parse FCS (Flow Cytometry Standard) files v2.0-3.1. Extract events as NumPy arrays, read metadata/channels, convert to C...

by Blurjp

scientific-fluidsim

Framework for computational fluid dynamics simulations using Python. Use when running fluid dynamics simulations includi...

by Blurjp

scientific-gene-database

Query NCBI Gene via E-utilities/Datasets API. Search by symbol/ID, retrieve gene info (RefSeqs, GO, locations, phenotype...

by Blurjp

scientific-generate-image

Generate or edit images using AI models (FLUX, Gemini). Use for general-purpose image generation including photos, illus...

by pathvanasoftware

scientific-geniml

This skill should be used when working with genomic interval data (BED files) for machine learning tasks. Use for traini...

by Blurjp

scientific-geo-database

Access NCBI GEO for gene expression/genomics data. Search/download microarray and RNA-seq datasets (GSE, GSM, GPL), retr...

by Blurjp

scientific-geopandas

Python library for working with geospatial vector data including shapefiles, GeoJSON, and GeoPackage files. Use when wor...

by Blurjp

scientific-gget

Fast CLI/Python queries to 20+ bioinformatics databases. Use for quick lookups: gene info, BLAST searches, AlphaFold str...

by Blurjp

scientific-gtars

High-performance toolkit for genomic interval analysis in Rust with Python bindings. Use when working with genomic regio...

by Blurjp

scientific-gwas-database

Query NHGRI-EBI GWAS Catalog for SNP-trait associations. Search variants by rs ID, disease/trait, gene, retrieve p-value...

by Blurjp

scientific-histolab

Lightweight WSI tile extraction and preprocessing. Use for basic slide processing tissue detection, tile extraction, sta...

by pathvanasoftware

scientific-hmdb-database

Access Human Metabolome Database (220K+ metabolites). Search by name/ID/structure, retrieve chemical properties, biomark...

by Blurjp

scientific-hypogenic

Automated LLM-driven hypothesis generation and testing on tabular datasets. Use when you want to systematically explore...

by Blurjp

scientific-hypothesis-generation

Structured hypothesis formulation from observations. Use when you have experimental observations or data and need to for...

by pathvanasoftware

scientific-illustrator-local

Rebuild scientific schematic images as editable SVG and Adobe Illustrator paths with live text, or draw new scientific d...

by SPYfighting

scientific-infographic

Use when creating high-quality scientific or medical infographic images or prompts, including review figures, disease ma...

by 2023Anita

scientific-integration-dnanexus-integration

DNAnexus cloud genomics platform. Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows, FAS...

by jackspace

scientific-integration-labarchive-integration

Electronic lab notebook API integration. Access notebooks, manage entries/attachments, backup notebooks, integrate with...

by jackspace

scientific-integration-latchbio-integration

Latch platform for bioinformatics workflows. Build pipelines with Latch SDK, @workflow/@task decorators, deploy serverle...

by jackspace

scientific-integration-opentrons-integration

Lab automation platform for Flex/OT-2 robots. Write Protocol API v2 protocols, liquid handling, hardware modules (heater...

by jackspace

scientific-integration-protocolsio-integration

Integration with protocols.io API for managing scientific protocols. This skill should be used when working with protoco...

by jackspace

scientific-iso-13485-certification

Comprehensive toolkit for preparing ISO 13485 certification documentation for medical device Quality Management Systems....

by pathvanasoftware

scientific-labarchive-integration

Electronic lab notebook API integration. Access notebooks, manage entries/attachments, backup notebooks, integrate with...

by pathvanasoftware

scientific-lamindb

This skill should be used when working with LaminDB, an open-source data framework for biology that makes data queryable...

by Blurjp

scientific-latchbio-integration

Latch platform for bioinformatics workflows. Build pipelines with Latch SDK, @workflow/@task decorators, deploy serverle...

by pathvanasoftware

scientific-manuscript

High-impact scientific manuscript development for top-tier journals such as Nature, Science, and Cell. Use when the user...

by MusserLab

scientific-market-research-reports

Generate comprehensive market research reports (50+ pages) in the style of top consulting firms (McKinsey, BCG, Gartner)...

by pathvanasoftware

scientific-markitdown

Convert files and office documents to Markdown. Supports PDF, DOCX, PPTX, XLSX, images (with OCR), audio (with transcrip...

by pathvanasoftware

scientific-matchms

Spectral similarity and compound identification for metabolomics. Use for comparing mass spectra, computing similarity s...

by pathvanasoftware

scientific-matlab

MATLAB and GNU Octave numerical computing for matrix operations, data analysis, visualization, and scientific computing....

by pathvanasoftware

scientific-matplotlib

Low-level plotting library for full customization. Use when you need fine-grained control over every plot element, creat...

by Blurjp

scientific-medchem

Medicinal chemistry filters. Apply drug-likeness rules (Lipinski, Veber), PAINS filters, structural alerts, complexity m...

by Blurjp

scientific-metabolomics-workbench-database

Access NIH Metabolomics Workbench via REST API (4,200+ studies). Query metabolites, RefMet nomenclature, MS/NMR data, m/...

by pathvanasoftware

scientific-method

Research methodology for hypothesis testing, evidence evaluation, and verification standards in geoscience research. Use...

by DrSatsuma1

scientific-method

The scientific method as an epistemological framework for producing reliable knowledge. Covers observation, question for...

by Tibsfox

scientific-modal

Run Python code in the cloud with serverless containers, GPUs, and autoscaling. Use when deploying ML models, running ba...

by Blurjp

scientific-molfeat

Molecular featurization for ML (100+ featurizers). ECFP, MACCS, descriptors, pretrained models (ChemBERTa), convert SMIL...

by Blurjp

scientific-networkx

Comprehensive toolkit for creating, analyzing, and visualizing complex networks and graphs in Python. Use when working w...

by Blurjp

scientific-neurokit2

Comprehensive biosignal processing toolkit for analyzing physiological data including ECG, EEG, EDA, RSP, PPG, EMG, and...

by pathvanasoftware

scientific-neuropixels-analysis

Neuropixels neural recording analysis. Load SpikeGLX/OpenEphys data, preprocess, motion correction, Kilosort4 spike sort...

by pathvanasoftware

scientific-opentrons-integration

Official Opentrons Protocol API for OT-2 and Flex robots. Use when writing protocols specifically for Opentrons hardware...

by pathvanasoftware

scientific-paper-2-web

This skill should be used when converting academic papers into promotional and presentation formats including interactiv...

by Blurjp

scientific-paper-figure

Use when creating publication-grade scientific figure images or prompts, including graphical abstracts, mechanism diagra...

by 2023Anita

scientific-pdb-database

Access RCSB PDB for 3D protein/nucleic acid structures. Search by text/sequence/structure, download coordinates (PDB/mmC...

by Blurjp

scientific-peer-review

Structured manuscript/grant review with checklist-based evaluation. Use when writing formal peer reviews with specific c...

by Blurjp

scientific-pennylane

Hardware-agnostic quantum ML framework with automatic differentiation. Use when training quantum circuits via gradients,...

by Blurjp

scientific-pkg-aeon

This skill should be used for time series machine learning tasks including classification, regression, clustering, forec...

by jackspace

scientific-pkg-anndata

This skill should be used when working with annotated data matrices in Python, particularly for single-cell genomics ana...

by jackspace

scientific-pkg-arboreto

Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when...

by jackspace

scientific-pkg-astropy

Comprehensive Python library for astronomy and astrophysics. This skill should be used when working with astronomical da...

by jackspace

scientific-pkg-biomni

Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular...

by jackspace

scientific-pkg-bioservices

Primary Python tool for 40+ bioinformatics services. Preferred for multi-database workflows: UniProt, KEGG, ChEMBL, PubC...

by jackspace

scientific-pkg-cobrapy

Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biology a...

by jackspace